List of useful links

This list does not pretend to be exaustive or even completele cover at least some field mentioned here. Nevertheless, I hope one can find it useful

Institutions, Organisations, etc.

  • EMBL homepage
  • European Bioinformatics Institute (EBI) Home Page
  • The National Center for Biotechnology Information
  • ExPaSy Molecular Biology Server
  • CCDC - Cambridge Crystallographic Data Centre
  • MIPS - Munich Information Center for Protein Sequences

  • Other available lists

  • The Molecular Biology Database Collection: an online compilation of relevant database resources by Andreas D. Baxevanis (published by Nucleic Acids Research)
  • Local (might be outdated) copy of "The Molecular Biology Database Collection..." (see link above)

  • Rost's
  • Pedro's BioMolecular Research Tools
  • Daniel Fischer's Homepage
  • Peter's Comprehensive Resources on Molecular Biology (PCR MB)

  • Data bases and search engines

  • Databases at the National Center for Biotechnology Information
  • Databases at the European Bioinformatics Institute
  • SRS at EBI, Hinxton, UK
  • SRSWWW at EMBL, Heidelberg
  • ExPASy - SWISS-PROT top page
  • Searching PIR
  • PDB WWW Home Page

  • SCOP
  • EBI: FSSP database, fold classification based on structure-structure alignment of proteins
  • EMBL: The FSSP database
  • UCL BSM CATH classification - intro page
  • 3-Dee Database of Protein Domain Definitions
  • CAMPASS
  • HOMSTRAD
  • DDBASE
  • SLoop Information
  • Protein domain database: DOMO
  • LPFC: A Library of Protein Family Cores
  • International Centre for Genetic Engineering and Biotechnology
  • Database of Macromolecular Movements
  • Pfam homepage
  • Compilation of tRNA Sequences and Sequences of tRNA Genes" (Russian mirror)

  • Computational services

  • The PredictProtein server for protein structure prediction and sequence analysis
  • Experimental service: ALB - secondary structure prediction of globular proteins
  • PSIpred Protein Structure Prediction Server
  • Intermediate Sequence Search
  • EMBL-EBI MaxSprout: server for generating protein backbone and side chain
  • 3DCrunch
  • 3DCrunchHome
  • Biomolecular Modelling Home Page
  • Computational Molecular Biology - Alignment, Strings, Sequences, Trees, Maps
  • COILS
  • EMBL Dali: email server for 3-D protein structure database searches

  • Scientific journals on the Web

  • The National Center for Biotechnology Information
  • MEDLINE: Free Evaluated MEDLINE
  • The World-Wide Web Virtual Library: Biosciences
  • Bio-Journals
  • BUBL Information Service Web Server
  • Springer Electronic Journals
  • Wiley InterScience Home Page
  • Academic Press Journals
  • Oxford University Press
  • Electronic Life Sciences Journals
  • nature home
  • Science
  • JMB Online
  • RNA and The RNA Society
  • The Proceedings of the National Academy of Sciences Online
  • FEBS Letters: Home page
  • Acta Crystallographica D
  • Journal of Molecular Biology
  • The EMBO Journal Online
  • Proteins: Structure, Function, and Genetics
  • Protein Science
  • Journal Citation Reports

  • Software

  • Search software in the database
  • RasMol V2.6-beta-2 Manual
  • Mage by Richardson's Lab
  • ExPASy - Tools
  • Raster3D (photorealistic molecular graphics)
  • Directory of /pub/esr/dotter
  • MolScript

  • Unsorted

  • The CMM Home Page
  • SEQNET WWW home page
  • The RNA World at IMB Jena